
Intermediate Care Facilities (ICF) : CA Department of …
2023年4月29日 · Intermediate Care Facilities for Individuals with Intellectual Disabilities (ICF/IID) are health facilities licensed by the Licensing and Certification Division of the California Department of Public Health to provide 24-hour-per-day residential services. The following provides information for developing a program plan for these facilities types.
Digital DNA-DNA hybridization for microbial species delineation …
Here λ(x,y) is a function of the lengths of the two genomes; in the simplest case, lambda is equal to the sum of the genome lengths. Other distance functions can be derived from the previously mentioned ones by applying a logarithmic transformation or by using twice the length of the shorter genome instead of the sum of the genome lengths, resulting in a total number of ten distance functions ...
Calculating dDDH between genomes using the TYGS webserver
It is recommended to use the dDDH (d4, in %) (5th column in the webserver and the PDF). Do all have a dDDH <70% to a type strain?
Using Core Genome Alignments To Assign Bacterial Species
Average nucleotide identity (ANI) and digital DDH (dDDH) were developed as genomic-era tools that allow for bacterial species classification with a high correlation to results obtained using wet lab DDH, while bypassing the associated difficulties (20 – 22).
Digital DNA-DNA hybridization for microbial species ... - PubMed
2010年1月28日 · Here we investigate state-of-the-art methods for inferring whole-genome distances in their ability to mimic DDH. Algorithms to efficiently determine high-scoring segment pairs or maximally unique matches perform well as a basis of inferring intergenomic distances.
Two novel species of rapidly growing mycobacteria ... - PubMed
The digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values for strains SN 1900 T and SN 1904 T were 61.0 % and 94.7 %, respectively; in turn, the corresponding dDDH and ANI values with M. novocastrense DSM 44203 T were 41.4 % and 42.8 % and 89.3 % and 89.5 %, respectively.
Diagnostics, resistance and clinical relevance of non-tuberculous ...
2025年2月17日 · Our study demonstrates the clinical relevance of uncommon NTM and the effectiveness of targeted deep-sequencing combined with WGS in identifying rare and novel NTM species. Non-tuberculous mycobacteria (NTM) are a diverse group of environmental organisms distinct from the Mycobacterium (M.) tuberculosis complex and M. leprae.
Multi-drug resistant - PubMed Central (PMC)
In this study, comparative genomic analyses of five ISS strains and three clinical isolates were carried out to elucidate antimicrobial resistance (AMR) phenotypic properties, MDR gene profiles, and genes related to potential virulence and pathogenic potential of the ISS Enterobacter strains.
Functional Analyses of the - MDPI
2023年5月2日 · In this study, the whole genomic sequence of bacterial strain HMB26553 was obtained. A phylogenetic tree based on the genome and ANI (average nucleotide identity), as well as dDDH (digital DNA–DNA hybridization), was constructed, and strain HMB26553 was identified as Bacillus velezensis.
Multi-drug resistant Enterobacter bugandensis species isolated …
2018年11月23日 · In this study, comparative genomic analyses of five ISS strains and three clinical isolates were carried out to elucidate antimicrobial resistance (AMR) phenotypic properties, MDR gene profiles, and genes related to potential virulence and pathogenic potential of the ISS Enterobacter strains.