
GVAF: generalized, flexible filtering software for annotated variant ...
2024年10月12日 · We developed Germline Variant Annotation and Filtering (GVAF), a command-line software tool that can handle annotated variant files in any table-shaped format. GVAF offers powerful filtering operations without the need for additional software or programming expertise.
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GVAF: generalized, flexible filtering software for annotated variant ...
2024年10月12日 · GVAF offers powerful filtering operations without the need for additional software or programming expertise. Results: Built on the Java framework and bash scripts, it provides extensive features, including flexible filtering rules, recognition of genotype-related fields from variant call format (VCF) files, and customizable result generation.
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GVAF | Systems Biology Lab.
GVAF can be used to perform the following functions on annotated files. Convert from the VCF derived genotype data to user-friendly genotype-related fields. Add the fields including further information about the variant. Filter out variants using simple but flexible filtering expression. Export output files with customized file format.
software such as in-house code scripts to handle annotated variant files. To overcome such limita-tions, we developed a command-line software tool GVAF, which handles arbitrary table-shaped annotated variant files and provides powerful f
(PDF) GVAF: generalized, flexible filtering software for annotated ...
2024年10月12日 · GVAF offers powerful filtering operations without the need for additional software or programming expertise. Results Built on the Java framework and bash scripts, it provides extensive...
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