The SCOP database, created by manual inspection and abetted by a battery of automated methods, aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known.

SCOPe (Structural Classification of Proteins — extended) is a database developed at the Berkeley Lab and UC Berkeley to extend the development and maintenance of SCOP. SCOP was conceived at the MRC Laboratory of Molecular Biology, and developed in collaboration with researchers in Berkeley.

The meaning of SCOP is an Old English bard or poet.

A scop (/ ʃɒp / [1] or / skɒp / [2]) was a poet as represented in Old English poetry. The scop is the Old English counterpart of the Old Norse skald, with the important difference that "skald" was applied to historical persons, and scop is used, for the most part, to designate oral poets within Old English literature.

The Structural Classification of Proteins (SCOP) database is a largely manual classification of protein structural domains based on similarities of their structures and amino acid sequences. A motivation for this classification is to determine the evolutionary relationship between proteins.

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The SCOP database aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between proteins whose three-dimensional structure is known and deposited in the Protein Data Bank. The main levels of the classification are:

Structural Classification of Proteins — extended (SCOPe) is a database of protein structural relationships that extends the SCOP database. SCOP is a (mostly) manually curated ordering of domains from the majority of proteins of known structure in a hierarchy according to structural and evolutionary relationships.

2024年6月25日 · Protein type groups together folds and IUPRs into four groups: soluble, membrane, fibrous and intrinsically disordered. Each of these types correlate with characteristic sequence and structural features. The SCOP database classifies non-redundant protein domains.

Scoop downloads and manages packages in a portable way, keeping them neatly isolated in ~\scoop. It won't install files outside its home, and you can place a Scoop installation wherever you like. For terminal applications, Scoop creates shims, a kind of command-line shortcuts, inside the ~\scoop\shims folder, which is accessible in the PATH.