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Neuronal activity regulates alternative exon usage
2020年11月10日 · We used two different bioinformatics approaches to identify alternative activity-induced exon usage and to predict alternative splicing, ANOSVA (ANalysis Of Splicing VAriation) which we here adjusted to accommodate data from different time points and FIRMA (Finding Isoforms using Robust Multichip Analysis).
(<20 nucleotide) 5’ exon that was efficiently spliced but failed to provide a docking site for the EJC. Using this mRNA, they demonstrated that the EJC is crucial for efficient nuclear export of spliced mRNAs. Itperforms this role through an interaction between the EJC component REF and the mRNA export factor TAP/p15. In the
The TREAT-NMD DMD Global Database: Analysis of More than …
Exon skipping aims to moderate disease progression by taking advantage of the knowledge that internally deleted dystrophins (seen in BMD) can be partially functional [Béroud et al., 2007; Aartsma-Rus et al., 2009; van Ommen and Aartsma-Rus, 2013].
The Exon Junction Complex Undergoes a Compositional Switch …
2018年11月27日 · The exon junction complex (EJC) is a mainstay of spliced mRNPs in mammalian cells. Mabin et al. discovered that the EJC undergoes a switch in composition from RNPS1-containing complex to CASC3-containing complex. This compositional switch changes higher-order EJC and mRNP structure and specifies two distinct phases of EJC-dependent NMD.
Novel EGFP reporter cell and mouse models for sensitive imaging …
2020年6月22日 · To confirm that the induction of exon skipping occurred in TA muscles, we extracted RNA from the TA muscles and performed RT-PCR with primers flanking exons 22 and 25 of the Dmd gene (Fig. 4f ...
Dissecting the human BDNF locus: Bidirectional transcription, …
We show that in human the rarely used exon VIII of BDNF is exclusively spliced to exon V. Exon V can also be spliced to exon IXd without including exon VIII. Exon VIII was not detected in any transcript other than the ones starting with exon V, pointing to a possible functional regulation between the usage of a certain promoter and subsequent ...
复现-jimmy教程之 外显子可视化 - 简书
2019年11月21日 · DEXSeq并不局限于二个组的比较,它针对复杂的实验设计,使用广义线性模型来带入类似方差分析最终实现差异性的分析。 在转换gene.gtf生成gff过程中,可能会遇到重叠的基因。 假如两个基因在同一条链上,且外显子区间重叠了,该脚本会默认的将两个基因合为单个”aggregate_gene”。 如果不想使用这种处理办法,那么在转换时加上参数 -r no,那么来自不同基因重合的外显子就会被跳过。 1.文件准备. --- ##R if (!requireNamespace("BiocManager", …
Thousands of exon skipping events differentiate among splicing …
2013年9月16日 · Novel exon skipping events appeared to be slightly less variable than known events, but were more tissue-specific. Our study represents the first effort to build a comprehensive catalog of alternative splicing in normal human tissues from RNA-seq data, while providing insights into the role of alternative splicing in shaping tissue ...
Recent evidence for the exon theory of genes - PubMed
I provide a history of the Exon Theory of Genes, a theory that holds that introns are extremely ancient characteristics of genes and that early genes were created through the intron-mediated shuffling of exons. The theory has existed since the late seventies.
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