BioJava provides an API to maintain local installations of the PDB, load and manipulate structures, perform standard analysis such as sequence and structure alignments and …

You can manually download the latest version of BioJava (7.1.4), which requires Java 1.8+, from the GitHub releases page, but continue reading this article for a more convenient solution to …

There are three main sources of documentation for BioJava: the tutorial, the cookbook and the Javadoc APIs. The most appropiate one will depend on you needs.

BioJava is an open-source project dedicated to providing a Java library for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows …

This page offers downloads for the BioJava 4.2.0 release. BioJava 4.2.0 is compatible with Java 7 and 8. About. BioJava 4.2.0 has been released and is available using Maven from Maven …

Required modules: biojava-modfinder, biojava-structure How can I identify protein modifications in a 3D structure? How can I get the list of supported protein modifications?

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating biological sequences, file parsers, DAS …

Parameters: firstMolecule - the atoms of the first molecule secondMolecule - the atoms of the second molecule firstMoleculeId - an identifier that identifies the first molecule within the …

org.biojava.nbio.alignment.Alignments. public class Alignments extends Object. Static utility to easily run alignment routines. To exit cleanly after running any parallel method that mentions …

org.biojava.nbio.structure.Calc; public class Calc extends Object. Utility operations on Atoms, AminoAcids, Matrices, Point3d, etc. Currently the coordinates of an Atom are stored as an …