2023年10月19日 · When analyzing data from in situ RNA detection technologies, cell segmentation is an essential step in identifying cell boundaries, assigning RNA reads to cells, and studying the gene expression and morphological features of cells.

Cell Segmentation is a task of splitting a microscopic image domain into segments, which represent individual instances of cells. It is a fundamental step in many biomedical studies, and it is regarded as a cornerstone of image-based cellular research.

2020年12月14日 · Here we introduce a generalist, deep learning-based segmentation method called Cellpose, which can precisely segment cells from a wide range of image types and does not require model retraining...

2022年1月18日 · CellSeg is a robust cell segmentation software for analyzing highly multiplexed tissue images, accessible to biology researchers of any programming skill level. Tissue imaging and single-cell analysis can reveal previously undetected biological structure and uncover subtle spatial relationships between cells.

2023年11月18日 · We train an object detector, CellFinder, to automatically detect cells and prompt SAM to generate segmentations. We show that this approach allows a single model to achieve state-of-the-art performance for segmenting images of mammalian cells (in tissues and cell culture), yeast, and bacteria collected with various imaging modalities.

2021年11月18日 · A principal challenge in the analysis of tissue imaging data is cell segmentation—the task of identifying the precise boundary of every cell in an image.

CellSAM achieves state-of-the-art performance on segmentation across a variety of cellular targets (bacteria, tissue, yeast, cell culture, etc.) and imaging modalities (brightfield, fluorescence, phase, etc.).

2023年7月10日 · Here we present subcellular spatial transcriptomics cell segmentation (SCS), which combines imaging data with sequencing data to improve cell segmentation accuracy. SCS assigns spots to cells...

Segment and track objects in microscopy images interactively with a few clicks! We implement napari applications for: interactive 2d segmentation (Left: interactive cell segmentation) interactive 3d segmentation (Middle: interactive mitochondria segmentation in EM) interactive tracking of 2d image data (Right: interactive cell tracking)

We provide two models here, deep cell model and the deep learning model developed by ourselves. Before Cell Segmentation, Tissue Segmentation, certain packages should be installed beforehand. Cell Segmentation version 3.0 does not need to install those python packages below, more details in Deep Learning Model.