Over the next dozen years, TCGA generated over 2.5 petabytes of genomic, epigenomic, transcriptomic, and proteomic data. The data, which has already led to improvements in our ability to diagnose, treat, and prevent cancer, will remain publicly available for anyone in the research community to use.

2025年1月30日 · High-quality datasets spanning cases from cancer genomic studies such as The Cancer Genomic Atlas (TCGA), Human Cancer Models Initiative (HCMI), Foundation Medicine Inc. (FMI), and Clinical Proteomic Tumor Analysis Consortium (CPTAC). Harmonized clinical and genomic data allow for convenient cross-analysis and comparison.

2020年5月29日 · The Cancer Genome Atlas Colon Adenocarcinoma (TCGA-COAD) data collection is part of a larger effort to build a research community focused on connecting cancer phenotypes to genotypes by providing clinical images matched to subjects from The Cancer Genome Atlas (TCGA).

2024年4月15日 · The Cancer Genome Atlas C olon Adenocarcinoma (TCGA-COAD) data collection is part of a larger effort to build a research community focused on connecting cancer phenotypes to genotypes by providing clinical images matched to subjects from The Cancer Genome Atlas (TCGA).

2022年11月13日 · 我们以 TCGA-COAD 的数据作为演示。 简单看一下这个数据： 可以看到是一个 data.frame 类型的文件。 这个文件一共有252664行，141列，包含了gene symbol，突变类型，突变位置，导致的氨基酸变化等信息。 下面就直接用 read.maf() 函数读取即可，没有任何花里胡哨的操作！ 然后就是进行各种可视化操作，毫无难度： 是不是非常简单，虽然没有直接提供单个癌症的MAF文件，但是使用 TCGAbiolinks 后，会直接帮我们整理好，没有任何难度。 如果你 …

Added data consisting of 5,567 samples from 6 TARGET studies from the Genomic Data Commons (GDC) as part of the Cancer Research Data Commons (NCI-CRDC) initiative. New Feature: New data source AlphaMissense is now integrated in Mutations tab. View the AlphaMissense data in the Mutation Table and the Mutation Mapper Tool.

我们获取乳腺癌 BCR Biotab 文件格式的临床信息. project = "TCGA-BRCA", data.category = "Clinical", data.type = "Clinical Supplement", data.format = "BCR Biotab" 查看具体包含的临床信息，有药物、随访、化疗等信息. 查看患者信息. bcr_patient_uuid bcr_patient_barc… form_completion_… prospective_collec… retrospective_colle… birth_days_to.

UCSC Xena数据库 中下载TCGA数据，其中包括了两个数据来源： GDC Hub （GDC TCGA COAD）与 TCGA hub （TCGA COAD）。 这两个来源的数据有何区别呢？ 下面以结肠癌 COAD数据集 为例： 1.数据更新时间不同。 GDC Hub与TCGA hub中数据更新时间不同，并且目前两种数据都不是TCGA官方数据库中最新版本数据（最新版为2023.12.4的 v39.0）。 ① GDC hub version：2019.7.19。 其方式等同于在 2019年7月19日使用 api方法从官网下载了数据。 …

Below is a general summary of the types of clinical, molecular characterization, and other types of data that may have been generated for the different cancer types studied. Raw data (e.g. BAMs), germline and non-validated mutations, and genotypes are under controlled access (indicated in …

Proteogenomic analysis of prospectively collected 110 human colon adenocarcinoma tumor normal pairs. Data generated by CPTAC. PubMed. Plots Beta!