.cool format .cool is a modern and flexible format to store Hi-C data. It uses HDF5 to store a sparse representation of the Hi-C data, which allows low memory requirements when dealing with high resolution datasets. Another popular format to store Hi-C data, .hic, can be converted into .cool files using hic2cool (https://github.com/4dn-dcic ...

Use coolpup.py command to perform pileups, and plotpup.py to visualize them. i.e. chr1,start1,end1,chr2,start2,end2. Should be tab-delimited. With a bed file, will consider all combinations of intervals. To pileup features along the diagonal instead, use the --local argument. Format of the features.

Coolpup.py is a tool for pileup analysis. But what are pile-ups? If you don’t know, you might have seen average ChIP-seq or ATAC-seq profiles which look something like this: Pile-ups in Hi-C are essentially the same as average profiles, but in 2 dimensions, …

.cool is a modern and flexible format to store Hi-C data. It uses HDF5 to store a sparse representation of the Hi-C data, which allows low memory requirements when dealing with high resolution datasets. Another popular format to store Hi-C data, .hic, can be converted into .cool files using hic2cool (https://github.com/4dn-dcic/hic2cool).

.cool is a modern and flexible format to store Hi-C data. It uses HDF5 to store a sparse representation of the Hi-C data, which allows low memory requirements when dealing with …

Allow interactions between 2 bed files! Some bugfixes, and added testing. Allow separate colorbars for each row or each subplot. A versatile tool to perform pile-up analysis on Hi-C …

Make Python code cooler. 100% coverage. Use and enjoy this code! Or fetch from github. Note: as fast as you didn't use F! Use pipeline to pass data as a positional parameter to the next function. Or you need to pass multiple parameters through the pipeline. Note that FF can only accept one parameter, and it must be an iterable object.

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CoolPy is an educational experiment where we show how to code fun things using python packages in short-format videos. If you enjoy these videos, I encourage you to join our discord 👾. ← Menu. Cool python packages you need to try.

PyPI helps you find and install software developed and shared by the Python community. Learn about installing packages. Package authors use PyPI to distribute their software. Learn how to …