FSL is a comprehensive library of analysis tools for FMRI, MRI and diffusion brain imaging data. It runs on macOS (Intel and M1/M2/M3), Linux, and Windows via the Windows Subsystem for Linux, and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).

The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label.

The FreeSurfer utilities mris_ca_train and mris_ca_label together implement a technique for automatically assigning a neuroanatomical label to each location on a cortical surface model based on probabilistic information estimated from a …

FSL comes bundled with a collection of NIFTI templates and atlases. A variety of probabilistic and discrete atlases are included, comprising cortical, sub-cortical, and regional parcellations. It is also possible to add your own atlases to FSL. All of the atlases included with FSL 6.0.4 have been aligned to the MNI152 standard template.

To accurately map a manually drawn or pre-existing label of a region of interest to several subjects in your study, you should first register your label to or draw your label on fsaverage (a template to which all subjects run with FreeSurfer have been registered to) and then use the mri_label2label command to map the label to individual ...

This meta-package installs all stereotaxic atlases that are shipped with FSL. Rahul S. Desikan, Florent Ségonne, Bruce Fischl, Brian T. Quinn, Bradford C. Dickerson, Deborah Blacker, Randy L. Buckner, Anders M. Dale, R. Paul Maguire, Bradley T. …

使用fsl命令行进行配准. 如果是在服务器上没有图形界面，可以使用xshell+xmanager将图像界面转发至自己的电脑，或者直接使用命令行进行配准. 其实用图形化界面也是利用命令行进行配准，只是图形化界面不需要自己输入命令行. 上例的命令行为

FSL Anatomical Labels for MNI Vector/ROI. Mni2atlas takes an ROI or a vector of coordinates (both in the MNI space) and returns labels from different FSL atlases. In VECTOR modality labels are returned in probability values (same results of FSL atlas tool).

2024年12月8日 · 要在fslview中加载JHU ICBM-DTI-81 White Matter Labels模板，可以按照以下步骤操作： 1. **安装FSL**：确保你已经安装了FSL（FMRIB Software Library）。如果还没有安装，可以从[FSL官方网站]...

• inter-subject: same anatomical region in all subjects (atlas with anatomical labels) • many many DOFs, same modality, least squares cost function, bias field model (FNIRT) • represented by a 3D deformation field = warp, displacement field