2006年7月19日 · Here, we extend the recently described Genome BLAST Distance Phylogeny (GBDP) strategy to compute phylogenetic trees from all completely sequenced plastid genomes currently available and from a selection of mitochondrial genomes representing the major eukaryotic lineages.

2019年5月16日 · GBDP, the Genome BLAST Distance Phylogeny approach 7,11,13,53, was chosen because it can be used to rapidly infer trees with branch support values from pairwise whole-genome or single-gene ...

The Genome BLAST Distance Phylogeny (GBDP) approach for calculating accurate intergenomic distances, the core of the GGDC, was originally developed to infer genome-based phylogenies. Its latest version allows for the inference of branch support and this has been successfully utilized in a number of important studies.

2013年2月21日 · GBDP (Genome Blast Distance Phylogeny) infers genome-to-genome distances between pairs of entirely or partially sequenced genomes, a digital, highly reliable estimator for the relatedness of genomes. Its application as an in …

In yet other cases authors present clusterings instead of phylogenetic trees. To the contrary, TYGS uses the Genome BLAST Distance Phylogeny (GBDP) method which addresses all of these aspects.

2016年12月29日 · Results show that trees based on cytoplasmic and extracellular peptidomes are only marginally in conflict with those based on whole proteomes, as inferred by the established Genome-BLAST Distance Phylogeny (GBDP) method. Hence, these results indicate that the two approaches can most likely be used complementarily even in …

A phylogenetic tree was constructed with the Type (Strain) Genome Server (19), which produces a GBDP tree by approximating intergenomic relatedness using the MASH algorithm among all type...

Here, we extend the recently described Genome BLAST Distance Phylogeny (GBDP) strategy to compute phylogenetic trees from all completely sequenced plastid genomes currently available and from a selection of mitochondrial genomes representing the major eukaryotic lineages.

2006年7月19日 · Here, we extend the recently described Genome BLAST Distance Phylogeny (GBDP) strategy to compute phylogenetic trees from all completely sequenced plastid genomes currently available and from a selection of mitochondrial genomes representing the major eukaryotic lineages.

2006年8月1日 · Here we present a web-based tool, Phylogenetic Tree Reconstruction (PTreeRec), which is based upon genome BLAST distance (GBD) strategy to infer phylogenetic trees from whole-genome data. A distance between any two genomes is calculated from BLAST coverage (Henz et al., 2005) or the sum of BLAST scores. PTreeRec is fully automatic in that it ...