Bioinformatics Tools: Gene Prediction/ Annotation - Yale University
2025年2月14日 · Genome wide Event finding and Motif discovery (GEM) links binding event discovery and motif discovery with positional priors in the context of a generative probabilistic model of ChIP data and genome sequence, resolves ChIP data into explanatory motifs and …
- 作者: Rolando Garcia-Milian
- Publish Year: 2014
Gene prediction - Wikipedia
In computational biology, gene prediction or gene finding refers to the process of identifying the regions of genomic DNA that encode genes. This includes protein-coding genes as well as RNA genes, but may also include prediction of other functional elements such as regulatory regions. Gene finding is one of the first and most important steps in understanding the genome of a species onc…
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The NCBI Eukaryotic Genome Annotation Pipeline
2024年4月4日 · The NCBI Eukaryotic Genome Annotation Pipeline provides content for various NCBI resources including Nucleotide, Protein, BLAST, Gene and the Genome Data Viewer genome browser. This page provides an …
Protocol for gene annotation, prediction, and validation of …
Here, we describe a detailed step-by-step protocol for gene annotation, prediction of genomic gene expansion, and its computational and experimental validation. Finally, we also detail …
Genome Annotation and Analysis - Sequence - Evolution
We discuss here the performance of manual, automated, and mixed approaches in genome annotation and ways to avoid some common pitfalls. Mostly, however, we concentrate in this …
- 作者: Eugene V. Koonin, Michael Y. Galperin
- 已发布: 2003
- Publish Year: 2003
A beginner's guide to eukaryotic genome annotation
2012年4月18日 · A pipeline for genome annotation must not only deal with heterogeneous types of evidence in the form of the expressed sequence tags (ESTs), RNA-seq data, protein …
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Galba: genome annotation with miniprot and AUGUSTUS
2023年8月31日 · Our pipeline addresses the critical need for accurate gene annotation in newly sequenced genomes, and we believe that GALBA will greatly facilitate genome annotation for …
Genome Annotation - PubMed
This chapter describes the genome annotation process from scratch genome sequencing to general genome annotation and specialized genome annotation using BLAST, BLAT2GO …
Current Progress in Gene and Genome Annotation
2024年7月31日 · The process of genome annotation places a significant emphasis on gene prediction, which has led to the development of several different approaches to accomplish …
Gene Prediction: Methods and Protocols | SpringerLink
This volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use-cases, and explain ways to simplify re …
