Feb 14, 2025 · Genome wide Event finding and Motif discovery (GEM) links binding event discovery and motif discovery with positional priors in the context of a generative probabilistic …

Gene prediction is one of the key steps in genome annotation, following sequence assembly, the filtering of non-coding regions and repeat masking. [3] Gene prediction is closely related to the …

Apr 4, 2024 · The NCBI Eukaryotic Genome Annotation Pipeline provides content for various NCBI resources including Nucleotide, Protein, BLAST, Gene and the Genome Data Viewer …

Here, we describe a detailed step-by-step protocol for gene annotation, prediction of genomic gene expansion, and its computational and experimental validation. Finally, we also detail …

We discuss here the performance of manual, automated, and mixed approaches in genome annotation and ways to avoid some common pitfalls. Mostly, however, we concentrate in this …

Apr 18, 2012 · A pipeline for genome annotation must not only deal with heterogeneous types of evidence in the form of the expressed sequence tags (ESTs), RNA-seq data, protein …

Aug 31, 2023 · Our pipeline addresses the critical need for accurate gene annotation in newly sequenced genomes, and we believe that GALBA will greatly facilitate genome annotation for …

This chapter describes the genome annotation process from scratch genome sequencing to general genome annotation and specialized genome annotation using BLAST, BLAT2GO …

Jul 31, 2024 · The process of genome annotation places a significant emphasis on gene prediction, which has led to the development of several different approaches to accomplish …

This volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use …