后面call interaction和loop什么的基本都是以.hic文件为输入，这里以call loop为例，用的是hiccups，已经集成在CPU/common/juicer_tools.jar 中（就是单独下载的那个软件）。

Juicer is a platform for analyzing kilobase resolution Hi-C data. In this distribution, we include the pipeline for generating Hi-C maps from fastq raw data files and command line tools for feature …

2020年7月6日 · HiCCUPS call loop的算法如上。 用法如下： hiccups [-m matrixSize] [-c chromosome (s)] [-r resolution (s)] [-k normalization (NONE/VC/VC_SQRT/KR)] [-f fdr] [-p …

Hi-C技术源于染色体构象捕获（Chromosome Conformation Capture, 3C）技术，利用 高通量测序 技术，结合生物信息分析方法， 研究全基因组范围内整个染色质DNA在空间位置上的关系， …

2019年7月2日 · 结果文件都放在了生成的 aligned 中，主要文件是 .hic 文件，其中的inter_30.hic 是设置了 mapq threshold >30 后得到的结果。 如果 GPU （cudd）可用，软件还会自动使用 …

2021年11月22日 · Hiccups are caused by the diaphragm involuntarily contracting. Some common causes for this contraction include drinking carbonated beverages, eating a large meal, …

2024年4月12日 · Hiccups are spasms of your diaphragm paired with a “hic” sound as your vocal cords close. They’re usually harmless, but sometimes, you may need treatment to help get rid …

2023年3月2日 · Hiccups are repeated spasms or sudden movements of the diaphragm that you can't control. The diaphragm is the muscle that separates your chest from your stomach area …

Hiccups are a common and usually transient condition affecting almost everyone during their lifetime. A hiccup is also known as a "hiccough" and as a "singultus" from the Latin "singult," …

2024年7月19日 · There are a few common triggers of hiccups, including dietary habits and emotional states. Learn what you can do to stop them quickly.