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ICGC ARGO Data Platform. The International Cancer Genome Consortium Accelerating Research in Genomic Oncology (ICGC ARGO) aims to uniformly analyze specimens from 100,000 donors with high quality clinical data in order to address outstanding questions that are vital to the quest to defeat cancer.

While the interactive web portal has been decommissioned, the most recent release and PCAWG data remain available for authorized users. For information on accessing ICGC 25K data, see the documentation for ICGC 25K Data Access.

做肿瘤相关生信分析的小伙伴都知道 TCGA 和 GEO，而 ICGC（International Cancer Genome Consortium）数据相比 TCGA 数据少了很多。 有不少文章也用到了 ICGC 的数据，用来作为一个独立的数据来源，补充验证 TCGA …

The ICGC Data Access Compliance Office (ICGC DACO) handles requests from scientists, researchers and commercial teams for access to ICGC Controlled Data.

Authentication to the server is done using username and password: Username: The email address that was approved for DACO access. This is the account you would use to log into the ARGO platform. Password: ICGC API Key. This is available on your ARGO Platform profile page. You can connect to this server using any SFTP client of your choice.

2019年8月23日 · 从官网的介绍来看，如果是 GDC数据集来源下载，其方式等同于在 2017年9月15日 使用 api 方法从官网下载了数据 注意：数据已经为log2 (count+1)转化值，数据已经进行了merge，可直接进行注释，进行后续分析。 搞清楚了时间之后，我们继续往下看 对应的TCGA数据的更新时间: 我们发现它对应TCGA官方数据的更新时间为 2017年4月22日 的 Data Release 8.0，那么从该时间到 2019年8月之间的时间 TCGA数据又经过了哪些更新呢？ 我们发现到现 …

当我们使用TCGA 表达数据，数据以gene-sample matrix形式整理好了；ICGC也是一个很大的癌症数据库，存放了几十种癌症的数据。 我们需要将系数矩阵修改成gene-sample matrix形式。

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