2017年2月3日 · iFrag is a new computational approach to infer the interface region of the interaction between two proteins, based only in sequence information and with a competitive performance compared to the state-of-the-art methodologies.

2017年2月3日 · To this end, we present here iFrag, a sequence-based computational method that infers possible interacting regions between two proteins by searching minimal common sequence fragments of the interacting protein pairs.

iFrag server exploits known 3D complexes (blastPDB) and protein-protein interaction networks (iFrag) with minimal sequence similarity searches to predict possible binding regions between two proteins. The input consists on the two sequences of the pair of …

Here, we present iFrag, a computational tool that searches minimal sequence similarity between pairs of interacting proteins to predict their binding region. iFrag makes no assumptions about protein domain composition, neither does it use protein structural information nor multiple sequence alignments. iFrag scores pairs of residues, one from ...

Here, we present iFrag, a computational tool that searches minimal sequence similarity between pairs of interacting proteins to predict their binding region. iFrag makes no assumptions about protein domain compo-sition, neither does it use protein structural information nor multiple sequence alignments. iFrag scores pairs of residues, one from ...

-ibam or -ifrag or -itag: input file path with filtered reads in one of bam, fragment or tagalign formats. Example files for supported types - bam, fragment, tagalign

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iFrag: A Protein–Protein Interface Prediction Server Based on Sequence Fragments

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iFrag: A Protein-Protein Interface Prediction Server Based on Sequence Fragments. ProteinPrompt is a web-server that uses machine-learning algorithms to calculate specific, currently unknown protein-protein interactions and offers a fast, accurate, easy-to-use online service for predicting binding partners from an input sequence.