ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.

2023年3月3日 · 该软件可以自动从序列中提取its1、its2、5.8s的序列并标注位置，下面是这款软件的安装与使用方法。第一步 拼接核糖体基因组 第二步 下载itsx安装包 第三步 安装软件...

To run ITSx, you need a FASTA-formatted output file. You can e.g. use the test.fasta file supplied with the package. To check for ITS sequences in the test file, type "ITSx -i test.fasta -o test" on the command line. If you are on a multicore machine, you might want to use the "--cpu 2" option to speed up the processes by using two (or more) cores.

ITSx -- Identifies ITS sequences and extracts the ITS region. by Johan Bengtsson-Palme et al., University of Gothenburg. Version: 1.1.2. ----------------------------------------------------------------- Usage: ITSx -i <input file> -o <output file> Options: -i {file} : DNA FASTA input file to investigate. # 输入文件 FASTA 格式.

We introduce ITSx, a Perl-based software tool to extract ITS1, 5.8S and ITS2 – as well as full-length ITS sequences – from both Sanger and high-throughput sequencing data sets.

使用ITSx (Bengtsson-Palme et al., 2013) 进行提取。 命令为ITSx -i sample1_relabel.fasta -o sample1_out --cpu 16 --save_regions all --preserve T -E 1e-2。 -i输入文件名，-o输出文件名，--cpu核心数，--save_region要保留的片段，all表示保留所有片段，包括18S，28S，ITS全长，ITS1，5.8S和ITS2，--preserve ...

2013年4月2日 · The tool is dubbed ITSx, and supersedes the more specific fungal ITS extractor written by Henrik Nilsson and colleagues. Henrik is once more the mastermind behind this completely rewritten version, in which I have done the lion’s share of the programming.

2021年3月15日 · ITSx: Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing

“ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.” Website Manual

2024年4月3日 · itsx软件的安装（提取its序列） 该软件可以自动从序列中提取ITS1、ITS2、5.8S的序列并标注位置，下面是这款软件的安装与使用方法。 第一步 拼...