Logolas is an R package for Enrichment Depletion Logo plots with string symbols, that highlights both enrichment and depletion of symbols, as opposed to standard logo plots, as in seqLogo package, that are biased towards highlighting enrichments. Logolas also generalizes logo plots to use both characters and strings.

Logolas allows the user to plot symbols for any alphanumeric string, comprising of English alphabets, numbers, punctuation marks, arrows etc. It also provides an easy interface for the user to create her own logo and add to the library of symbols that can be plotted.

**Logolas** allows the user to scale the data based on a specified background information - specified through the input `bg`. The default value is NULL, in which case equal probability is assigned to each symbol.

Bioconductor version: Release (3.6) Produces logo plots of a variety of symbols and names comprising English alphabets, numerics and punctuations. Can be used for sequence motif generation, mutation pattern generation, protein amino acid geenration and symbol strength representation in any generic context. Author: Kushal Dey [aut, cre]

R package for Enrichment Depletion and String Logos. Authors. Kushal K Dey &nbsp | &nbsp Dongyue Xie &nbsp | &nbsp Matthew Stephens.

2020年4月28日 · Logolas is an R package for Enrichment Depletion Logo plots with string symbols, including adaptive scaling of position-weight matrices (PWMs). Logolas can be considered an extension to the seqLogo package .

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Logolas. Bioconductor version: 3.9. Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.

Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.

Logolas is an R package for Enrichment Depletion Logo plots with string symbols, that highlights both enrichment and depletion of symbols, as opposed to standard logo plots, as in seqLogo package, that are biased towards highlighting enrichments. Logolas also generalizes logo plots to use both characters and strings.

2020年4月28日 · Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.