
GitHub - kkdey/Logolas: R package for Enrichment Depletion …
Logolas is an R package for Enrichment Depletion Logo plots with string symbols, that highlights both enrichment and depletion of symbols, as opposed to standard logo plots, as in seqLogo package, that are biased towards highlighting enrichments. Logolas also generalizes logo plots to use both characters and strings.
Guided Tutorial - GitHub Pages
Logolas allows the user to plot symbols for any alphanumeric string, comprising of English alphabets, numbers, punctuation marks, arrows etc. It also provides an easy interface for the user to create her own logo and add to the library of symbols that can be plotted.
Logolas/vignettes/Logolas.Rmd at master · kkdey/Logolas - GitHub
**Logolas** allows the user to scale the data based on a specified background information - specified through the input `bg`. The default value is NULL, in which case equal probability is assigned to each symbol.
Logolas - Bioconductor
Bioconductor version: Release (3.6) Produces logo plots of a variety of symbols and names comprising English alphabets, numerics and punctuations. Can be used for sequence motif generation, mutation pattern generation, protein amino acid geenration and symbol strength representation in any generic context. Author: Kushal Dey [aut, cre]
Logolas - GitHub Pages
R package for Enrichment Depletion and String Logos. Authors. Kushal K Dey   |   Dongyue Xie   |   Matthew Stephens.
Logolas: README.md - R Package Documentation
2020年4月28日 · Logolas is an R package for Enrichment Depletion Logo plots with string symbols, including adaptive scaling of position-weight matrices (PWMs). Logolas can be considered an extension to the seqLogo package .
Logolas - Bioconductor
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Logolas. Bioconductor version: 3.9. Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.
Bioconductor Logolas - Anaconda.org
Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.
Logolas/README.md at master · kkdey/Logolas - GitHub
Logolas is an R package for Enrichment Depletion Logo plots with string symbols, that highlights both enrichment and depletion of symbols, as opposed to standard logo plots, as in seqLogo package, that are biased towards highlighting enrichments. Logolas also generalizes logo plots to use both characters and strings.
Logolas: EDLogo Plots Featuring String Logos and Adaptive …
2020年4月28日 · Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.
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