This is the released version of minfi; for the devel version, see minfi. Analyze Illumina Infinium DNA methylation arrays

2024年11月19日 · “Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.” Bioinformatics 30 (10): 1363–9. …

To predict the gender, minfi separates the points by using a cutoff on \(\log_2{med(Y)}-\log_2{med(Y)}\). The default cutoff is \(-2\). Since the algorithm needs to map probes to the X …

minfi version: 1.10.2 Manifest version: 0.4.0 The functions getBeta, getM and getCN return respectively the Beta value matrix, M value matrix and a the Copy Number matrix. > beta <- …

bumphunter-methods Methods for function bumphunter in Package minfi Description Estimate regions for which a genomic profile deviates from its baseline value. Originally imple-mented to …

This is the development version of minfi; for the stable release version, see minfi. Analyze Illumina Infinium DNA methylation arrays

minfi provides several plots that can be useful for identifying samples with data quality problems. These functions can display summaries of signal from the array (e.g. density plots) as well as …

2024年4月30日 · Some of the packages, such as minfi and methylumi include a framework for reading in the raw data from IDAT files and various specialised objects for storing and …

This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see minfi. Analyze Illumina's 450k methylation arrays. Bioconductor version: 2.13 Tools for …

As part of Bioconductor 2.13, we have released minfi 1.8.x. Due to a number of last minute errors, the recommended version is 1.8.3 (or bigger). Users may find that their old objects cannot be …