CRAN: Package motif - The Comprehensive R Archive Network
motif: Local Pattern Analysis. Describes spatial patterns of categorical raster data for any defined regular and irregular areas. Patterns are described quantitatively using built-in signatures …
motifStack | 绘制motif序列结构图 - 知乎 - 知乎专栏
我们在日常分析中，有时候会比较不同物种间motif序列的保守性。今天小编教大家使用R包“motifStack ”绘制美观的 motif序列结构图 ！
R语言-制作motif的PWM - CSDN博客
2022年2月17日 · 下面介绍一下如何使用 R语言 来计算motif的PFM和PPM，代码参考了ggseqlogo的 源代码 并进行了修改与注释。 要实现的目标：输入含有n条相同长度的DNA …
Bioconductor - universalmotif
Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats …
omarwagih/rmotifx: Discovery of biological sequence motifs in R - GitHub
This package contains a useable implementation the motif-x tool in the R programming language. motif-x (short for motif extractor) is a software tool designed to extract overrepresented …
9.7 Motif discovery | Computational Genomics with R - GitHub …
rGADEM is an unsupervised, stochastic motif discovery tools, which uses sampling with subsequent enrichment analysis to find over-represented sequence motifs. We will firstly load …
bjmt/universalmotif: Motif manipulation functions for R. - GitHub
This package allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif …
GreenleafLab/motifmatchr: Fast motif matching in R - GitHub
motifmatchr is an R package for fast motif matching, using C++ code from the MOODS library. The MOODS library was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki. …
基因家族分析(2) ggplot2绘制motif分析图 - 简书
可以看到官网提供的图如上所示，不算丑也不富有美感但是不利于我们进行拼图，下面让我们通过ggplot2来绘制一个高端的motif图. meme分析时会返会保守基序的序列可下载后进行多序列比 …
motifmatchr: 在R语言中分析peak中里是否有motif匹配 - 简书
2019年8月17日 · motifmatchr的作用就是分析众多的序列和众多的motifs, 从中找到哪个序列包含哪个motif. 它的核心函数就是matchMotifs，最大特点就是快，因为它用的...