2024年10月17日 · NAMD, recipient of a 2002 Gordon Bell Award, a 2012 Sidney Fernbach Award, and a 2020 Gordon Bell Prize, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.

2018年2月26日 · Introductory and advanced tutorials and other resources on using the NAMD (Nanoscale Molecular Dynamics) software program. The tutorials below focus on NAMD-specific features, although many other tutorials utilize NAMD as well.

Download NAMD: NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. Simulation preparation and analysis is integrated into the visualization package VMD. Visit the NAMD website for complete information and documentation.

The NAMD User's Guide describes how to run and use the various features of the molecular dynamics program NAMD. This guide includes the capabilities of the program, how to use these capabilities, the necessary input files and formats, and how to run the program both on uniprocessor machines and in parallel.

2020年8月5日 · NAMD 2.8b2 User's Guide (online, 569K HTML or 973K PDF) NAMD 2.8b2 Release Notes NAMD 2.8b1 User's Guide (online, 569K HTML or 971K PDF) NAMD 2.8b1 Release Notes NAMD 2.7 User's Guide (online, 413K HTML or 861K PDF) NAMD 2.7 Release Notes NAMD 2.7b4 User's Guide (online, 414K HTML or 864K PDF)

2024年11月14日 · Participants learn how to use NAMD to set up basic molecular dynamics simulations, and to understand typical NAMD input and output files, with an emphasis on such files for protein energy minimization and equilibration in water.

The NAMD User’s Guide describes how to run and use the various features of the molecular dynamics program NAMD. This guide includes the capabilities of the program, how to use these capabilities, the necessary input les and formats, and how to run the program both on uniprocessor machines and in parallel.

2013年8月6日 · The Theoretical and Computational Biophysics Group at the University of Illinois is proud to announce the public release of a new version of NAMD, a parallel, object-oriented molecular dynamics code designed for high-performance simulation of …

Abstract: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomo-lecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop and laptop computers. NAMD works with AMBER

As highlighted in our recent publication in J. Biol. Chem., Resource researchers employed molecular dynamics simulations using NAMD to study this mechanism. Utilizing a specifically designed membrane model with enhanced lipid motion, they captured how the enzyme binds to the membrane and described its pose within the membrane.