RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of: These data can be explored in context of external annotations providing a structural view of biology. 3D visualization for PDB structures and ligand binding sites.

Import, visualize, and align multiple structures in an interactive 3D Mol* viewer. WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

PDB-101 training materials help graduate students, postdoctoral scholars, and researchers use PDB data and RCSB PDB tools. Outreach content demonstrate how PDB data impact fundamental biology, biomedicine, bioengineering/biotechnology, and energy sciences in 3D for a diverse and multidisciplinary user community.

Several interactive, Java-based tools 1 can be used to visualize PDB data and create pictures. Protein Workshop offers easily customized views; Simple Viewer utilizes a quick ribbon display; and Ligand Explorer visualizes the interactions of bound ligands in …

2023年4月10日 · PDBsum is a pictorial database that provides an at-a-glance overview of the contents of each 3D structure deposited in the Protein Data Bank (PDB). It shows the molecule (s) that make up the structure (ie protein chains, DNA, ligands and metal ions) and schematic diagrams of the interactions between them.

（1）根据相关文献搜索到目的基因的中温酶或高温酶，得到氨基酸序列，搜索pdb文件（若在PDB数据库搜索不到，可在phyre网站生成pdb文件）。 （2）利用pymol软件打开目的序列与搜索到的其他序列，选择Alignment进行序列比对，得到比对图。

2024年9月10日 · 在pdb数据库中下载图片的步骤包括访问pdb数据库网站、搜索特定的蛋白质结构、选择并查看结构、生成和导出图像文件。 通过使用PDB数据库提供的可视化工具或第三方软件，你可以生成高质量的蛋白质结构图像，应用于科学研究、教学、展示等场景。

These molecular graphics programs allow you to upload a PDB file, display the structure on your computer, and create custom pictures of it. In addition, they often include analysis tools that allow you to measure distances and bond angles, and identify interesting structural features.

Acknowledgement: Illustration by David S. Goodsell, RCSB Protein Data Bank. doi: 10.2210/rcsb_pdb/goodsell-gallery-028. This painting shows a cross-section through an Escherichia coli cell. The characteristic two-membrane cell wall of gram-negative bacteria is shown in green, with many lipopolysaccharide chains extending from the surface and a ...

Enter the PDB code in the search box and press the Go button. Scroll to the molecular graphic section and click on the spin icon to load an interactive view of the structure within the web page. Alternatively, click on the launch icon to open the advanced (full feature) version of iCn3D, NCBI's web-based 3D structure viewer, in a separate window.