2024年10月29日 · Reading in multiple CAGE datasets from various sources; user provided BAM or TSS input files, public CAGE datasets from accompanying data package. Correcting systematic G nucleotide addition bias at the 5′ end of CAGE tags. Plotting pairwise scatter plots, calculating correlation between datasets and merging datasets.

After clustering, CAGEr performs analyses of promoter width and detects differential usage of TSSs (promoter shifting) between samples. CAGEr also exports its data as genome browser tracks, and as R objects for downsteam expression analysis by other Bioconductor packages such as DESeq2, CAGEfightR, or seqArchR.

Learn R Programming CAGEr (version 1.14.0) Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

CAGE is a widely used high throughput assay for measuring transcription start site (TSS) activity. CAGEfightR is an R/Bioconductor package for performing a wide range of common data analysis tasks for CAGE and 5'-end data in general.

In the mathematical field of graph theory, a cage is a regular graph that has as few vertices as possible for its girth. Formally, an (r, g)-graph is defined to be a graph in which each vertex has exactly r neighbors, and in which the shortest cycle has a length of exactly g.

Cap Analysis of Gene Expression (CAGE) is one of the most popular 5'-end sequencing methods. In a single experiment, CAGE can be used to locate and quantify the expression of both Transcription Start Sites (TSSs) and enhancers.

Cap Analysis of Gene Expression (CAGE)是目前最常用的5 '端测序方法之一。在单个实验中，CAGE可用于定位和量化转录起始位点(tss)和增强子的表达。该工作流是一个关于如何使用CAGEfightR包在Bioconductor项目中编排CAGE数据分析的案例研究。

2013年4月16日 · Cap Analysis Gene Expression (CAGE) is a molecular technique, developed at RIKEN, which captures all transcription starting sites (TSSs) of an RNA population. The C in CAGE refers to the altered nucleotide at the 5' site of precursor messenger RNA, termed the cap, which CAGE targets and pulls down.

Polaris Rzr Pro R 4 seat Flat Top Cage Cage, This Cage is built of quality D.O.M Metal, The Cage Features 1.75x.120 Wall Mains with 1.75x.095 supporting tubes. These Cages are CNC Cut and CNC bent. If you are not familiar with Metal tubing or processing...