R2DT is a tool for visualising RNA secondary structure.

R2DT. Visualise RNA secondary structure in standard orientations using RNA 2D Templates (R2DT). Learn more in the R2DT paper

R2DT automatically generates RNA secondary structure diagrams in consistent, reproducible and recongnisable layouts using a library of templates representing a wide range of RNAs. The following example visualisations show LSU, SSU, and 5S rRNA, four tRNAs, two RNAse P, snoRNA, MoCo riboswitch, and U4 snRNA: R2DT can be used in multiple ways:

2021年6月9日 · R2DT encapsulates a comprehensive pipeline for template-based RNA 2D visualisation, generating diagramatic 2D representations of RNA structures based on a representative library of templates, and...

2025年2月8日 · R2DT is the only software that can display RNA structures in consistent, reproducible, and recognizable layouts, particularly for well-established diagrams such as rRNAs and tRNAs. R2DT ensures that similar RNA sequences are consistently displayed in uniform orientations, preserving structural correspondence essential for comparative analysis.

2025年2月8日 · R2DT is a software package designed to visualize RNA 2D structures in consistent, recognizable, and reproducible layouts. The latest release, R2DT 2.0, introduces multiple significant features, including the ability to display position-specific information, such as single nucleotide polymorphisms or SHAPE reactivities.

2024年9月29日 · R2DT is a software package designed to visualise RNA 2D structures in consistent, recognisable, and reproducible layouts. The latest release, R2DT 2.0, introduces multiple significant features, including the ability to display position-specific information, such as single nucleotide polymorphisms (SNPs) or SHAPE reactivities.

The R2DT software automatically generates RNA secondary structure diagrams in consistent, reproducible and recognisable layouts using a library of templates representing a wide range of RNAs. How does it work? Find out more about R2DT, read the R2DT paper, or …

2021年6月9日 · Here, we present R2DT, a method for predicting and visualising a wide range of RNA structures in standardised layouts. R2DT is based on a library of 3,647 templates representing the majority of known structured RNAs.

R2DT encapsulates a comprehensive pipeline for template-based RNA 2D visualisation, generating diagramatic 2D representations of RNA structures based on a representative library of templates, and is implemented as both a standalone application (https://github.com/rnacentral/R2DT) and a web server (https://rnacentral.org/r2dt).