Containers in Galaxy — Galaxy Project 24.2.dev0 documentation
Galaxy can run tools inside containers using docker or singularity. The containers can be either explicit or mulled (also called multi package containers). The former are given by <container> requirements pointing to a specific container. The latter are containers built for a set of requirements of type package.
Use Singularity containers for running Galaxy jobs
Jan 8, 2021 · In this tutorial you will learn how to configure Galaxy to run jobs using Singularity containers provided by the BioContainers community. BioContainers is a community-driven project that provides the infrastructure and basic guidelines to create, manage and distribute bioinformatics packages (e.g conda) and containers (e.g docker, singularity).
Gravitational singularity - Wikipedia
A gravitational singularity, spacetime singularity, or simply singularity, is a theoretical condition in which gravity is predicted to be so intense that spacetime itself would break down catastrophically. As such, a singularity is by definition no longer part of the regular spacetime and cannot be determined by "where" or "when".
扫盲|容器技术Docker和Singularity - CSDN博客
Nov 1, 2020 · Singularity是一个相对较新的容器软件，仍处于开发状态，兼容Docker容器这一特性让它的用户群体增长迅速。 Singularity假设用户在一个有root权限的系统上构建容器， 在一个没有root权限的系统上运行容器 ，这更符合科研应用的场景，因为HPC的用户是不会有root权限 ...
Galaxy Project - GitHub
Galaxy is an open, web-based platform for data-intensive research. Data intensive science for everyone. Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials. Environmental dependencies required by the Galaxy helm chart, such as operators.
Galaxy Depot Software Stack - ScientificComputing - ETH Z
The singularity containers can be used on Euler as single tools or in workflows, eg Snakemake. First, you would need to fetch the container from Galaxy depot. Then you can run it with Singularity. You can find an example snakemake workflow for RNA-seq with the use of Galaxy stack containers at.
Running nextflow nfcore pipelines using a singularity - galaxy …
Nov 15, 2021 · I was wondering if it is possible to run nextflow pipelines from nfcore on a locally installed galaxy server? See examples here Pipelines » nf-core The nextflow pipelines from nfcore are downloadable as singularities and I have seen some training material on using singularity containers within galaxy Use Singularity containers for running ...
C3BI-pasteur-fr/ngphylogeny-galaxy - GitHub
This image integrates a running galaxy instance, with all phylogenetic tools installed on environment modules using singularity images.
Approaching the singularity | Science - AAAS
Nov 16, 2018 · In the opening chapter of his new book, Einstein's Monsters, astronomer and popular science writer Chris Impey puts the problem succinctly: “It made no sense for a physical object to have zero size and infinite mass density. Einstein's theory had …
In this galaxy far, far away - Nature Physics
Nov 2, 2020 · Robert Oppenheimer and Hartland Snyder then put forward the idea that an astronomical body with a radius less than or equal to the Schwarzschild radius would undergo gravitational collapse towards...
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