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TRGT is a tool for targeted genotyping of tandem repeats from PacBio HiFi data. In addition to the basic size genotyping, TRGT profiles sequence composition, mosaicism, and CpG methylation …

TRGT-denovo is a companion tool of TRGT (Tandem Repeat Genotyper) that further annotates TRGT genotyping using additional read-level information from samples, specifically for …

2024年1月2日 · Here we describe the Tandem Repeat Genotyping Tool (TRGT), a method for analysis of repeats in long-read data, as well as a companion method for Tandem Repeat …

In this tutorial, you will learn the basics of TRGT by analyzing a tiny example dataset included in this repository. Our example dataset consists of a reference genome (reference.fasta), a file …

2024年1月2日 · We developed a computational method — the Tandem Repeat Genotyping Tool (TRGT, pronounced ‘target’) — that characterizes TRs using PacBio HiFi long-read …

Here we introduce the Tandem Repeat Genotyping Tool (TRGT) and an accompanying TR database. TRGT determines the consensus sequences and methylation levels of...

2024年7月16日 · We developed TRGT-denovo, a computational method designed to accurately identify all types of de novo TR mutations—including expansions, contractions, and …

2022年9月27日 · The Tandem Repeat Genotyping Tool (TRGT: pronounced as “target”) is intended to provide scientists with the ability to obtain a full characterization of the sequence …

PacBio has developed the Tandem repeat genotyping tool (TRGT) and Tandem repeat visualizer (TRVZ) as bioinformatics tools to accurately profile short tandem repeats, variable number …