
USDA-VS/vSNP: vSNP -- validate SNPs - GitHub
vSNP is an accreditation-friendly and robust tool, designed for easy error correction and SNP validation. vSNP rapidly generates annotated SNP tables and corresponding phylogenetic trees that can be easily scaled for reporting purposes.
GitHub - USDA-VS/vSNP3: vSNP -- validate SNPs
vSNP3 is a robust tool for high-resolution Single Nucleotide Polymorphism (SNP) analysis tailored for diagnostic laboratories. It is designed for disease tracing and outbreak investigations. It generates BAM, VCF, and annotated SNP matrices along with corresponding phylogenetic trees.
vSNP/docs/detailed_usage.md at master · USDA-VS/vSNP - GitHub
This document specifies the procedures for running whole genome SNP analysis tool called vSNP. To run vSNP. Hardware: Computer with a minimum of 4 cores and 8 GB of memory with the following operating systems installed: MacOS, …
vSNP: a SNP pipeline for the generation of transparent SNP …
Jun 1, 2024 · vSNP has proven effective for real-time phylogenetic analysis of disease outbreaks and eradication efforts, including bovine tuberculosis, brucellosis, virulent Newcastle disease, SARS-CoV-2, African swine fever, and highly pathogenic avian influenza.
vSNP: a SNP pipeline for the generation of transparent SNP
Jun 1, 2024 · Results: vSNP has proven effective for real-time phylogenetic analysis of disease outbreaks and eradication efforts, including bovine tuberculosis, brucellosis, virulent Newcastle disease, SARS-CoV-2, African swine fever, and highly pathogenic avian influenza.
The Galaxy / vSNP tools are critical components of several Galaxy workflows that locate and validate SNPs in bacterial samples and produce annotated SNP tables and corresponding phylogenetic trees.
Vsnp - Anaconda.org
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
vSNP3/README.md at main · USDA-VS/vSNP3 · GitHub
vSNP3 is a robust tool for high-resolution Single Nucleotide Polymorphism (SNP) analysis tailored for diagnostic laboratories. It is designed for disease tracing and outbreak investigations. It …
United States Department of Agriculture:VSNP:用于从全基因组 …
vsnp管道通过简化snp验证和验证过程,使得非专业人员也能轻松理解和使用。该管道能够处理多种病原体的数据,包括牛结核病、布鲁氏菌病、高致病性禽流感等多种疾病。vsnp不仅生成易于阅读的snp矩阵,还提供相应的系统发育树,使得结果的解读更为直观。
(PDF) vSNP: a SNP pipeline for the generation of transparent SNP ...
Jun 1, 2024 · Results vSNP has proven effective for real-time phylogenetic analysis of disease outbreaks and eradication efforts, including bovine tuberculosis, brucellosis, virulent Newcastle disease,...