
CATH: Protein Structure Classification Database at UCL
CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor.
SCOP| Structural Classification of Proteins - EMBL-EBI
The SCOP database, created by manual inspection and abetted by a battery of automated methods, aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known.
生物数据库之二级蛋白质数据库 - 简书
CATH 和SCOP 是两个重要的蛋白质结构分类数据库。 CATH 数据库 由伦敦大学1993 年创建。 CATH的名字C、A、T、H 是数据库中四种结构分类层次的首字母。 所有蛋白质结构域在CATH 中被首先分成4 种CLASS,这就是C。 四种CLASS 分别是全α型,全β型, α +β型,低二级结构型。 比如图中第一行这三个蛋白质,很显然左边是全α的,右边是全β的,中间是 α +β的。 每一个Class 中的结构域又被具体分为不同的architecture,也就是A。 A 这一层是按照螺旋和折叠所形成的 …
CATH database - Wikipedia
The CATH Protein Structure Classification database is a free, publicly available online resource that provides information on the evolutionary relationships of protein domains.
Systematic comparison of SCOP and CATH: a new gold standard …
2009年4月17日 · We create a new mapping between SCOP and CATH and define a consistent benchmark set which is shown to largely reduce errors made by structure comparison methods such as TM-Align and has useful further applications, e.g. for machine learning methods being trained for protein structure classification.
【生信MOOC】生信数据库2_cath数据库-CSDN博客
2022年3月3日 · SCOP(Structural Classification of Proteins)是一个基于蛋白质三维结构的手工分类系统,由研究者通过分析蛋白质结构的相似性和进化关系手动构建。 家族(Family):基于高序列相似性,将具有相似结构和功能的 蛋白质 放在一起。
Structural Classification of Proteins database - Wikipedia
Similar to CATH and Pfam databases, SCOP provides a classification of individual structural domains of proteins, rather than a classification of the entire proteins which may include a significant number of different domains. The SCOP database is freely accessible on the internet.
蛋白质SCOP数据库介绍 - CSDN博客
2024年9月21日 · SCOP(Structural Classification of Proteins)是一个基于蛋白质三维结构的手工分类系统,由研究者通过分析蛋白质结构的相似性和进化关系手动构建。 家族(Family):基于高序列相似性,将具有相似结构和功能的蛋白质放在一起。
【6.2.3】二级蛋白质结构数据库-CATH(结构分类数据库) - Sam' …
cath 和 scop 是两个重要的蛋白质结 构分类数据库。 CATH 数据库( http://www.cathdb.info/ )由伦敦大学 1993 年创建。 CATH 这个数据库的名字 C、A、T、H 是数据库中四种结构分类层次的首字母。
A systematic comparison of protein structure classifications: SCOP ...
1999年9月15日 · SCOP and CATH both classify the methanol dehydrogenase structure as an eight-bladed propeller fold (CATH indicates this at the architecture level), but disagree on the transducin: CATH classifies it as a six-bladed propeller architecture, whereas SCOP considers it a seven-bladed fold.