
ciliaFA: a research tool for automated, high-throughput measurement of ...
2012年8月1日 · In this paper, we describe software that was validated by comparing results to those obtained by direct measurement of high-speed video recordings of cilia. The program also runs using open-source software. To evaluate a wide range of ciliary beat frequencies we studied both human respiratory cilia and ependymal cilia from the rat brain.
DeepCilia: Automated, deep-learning based engine for precise …
2024年4月1日 · In this study we propose DeepCilia, a Ciliary beating frequency (CBF) decay estimation engine that autonomously detects ciliated strias using YOLOv8 to perform the detection task and is able to produce accurate estimations even for low FPS videos, by using the Short-Time Fourier Transform (STFT).
Quantifying cilia beat frequency using high‐speed video …
One‐second movies of cilia were collected at >600 fps from mouse airways and ependyma at room‐temperature or 37°C. Movies were then down‐sampled to 30–300 fps. CBF was quantified for identical cilia at different framerates by either manual counting or automated MATLAB script.
Ciliary Beating Compartmentalizes Cerebrospinal Fluid Flow in the …
Here, we study motile cilia and CSF flow in the brain ventricles of larval zebrafish. We identified that different populations of motile ciliated cells are spatially organized and generate a directional CSF flow powered by ciliary beating.
Primary Cilia Formation Does Not Rely on WNT/β-Catenin Signaling
2021年2月26日 · Primary cilia act as crucial regulators of embryo development and tissue homeostasis. They are instrumental for modulation of several signaling pathways, including Hedgehog, WNT, and TGF-β. However, gaps exist in our understanding of how cilia formation and function is regulated.
The molecular structure of mammalian primary cilia revealed by …
2020年9月28日 · Primary cilia are microtubule-based organelles that are important for signaling and sensing in eukaryotic cells. Unlike the thoroughly studied motile cilia, the three-dimensional architecture...
Methods for studying ciliary import mechanisms - PMC
In this chapter, we describe methods to measure the permeability barrier of the ciliary gate by microinjection of fluorescent proteins and dextrans of different sizes into ciliated cells. We also describe a fluorescence recovery after photobleaching (FRAP) assay to measure the entry of ciliary proteins into the ciliary compartment.
Frontiers | Primary Cilia, Ciliogenesis and the Actin Cytoskeleton: A ...
2020年12月16日 · Primary cilia are microtubule-based organelles that extend from the apical surface of the majority of mammalian cells . Cilia act as “cellular antennae” in vertebrates, receiving diverse inputs from the extracellular environment and transducing signals in response.
Live Imaging and Analysis of Cilia and Cell Cycle Dynamics
2021年6月4日 · Cilia are small microtubule-based protrusions projecting from the surface of most mammalian cell types . Akin to cellular “antennae,” primary cilia play critical roles in sensing and eliciting cellular responses to environmental and developmental signals, from embryogenesis through to adult tissue homeostasis.
CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54; CFAP54 - OMIM
Respiratory epithelial cilia from Cfap-null mice had a structural defect in the C1d projection, resulting in decreased ciliary beat frequency and defective cilia-driven flow. Zhao et al. (2023) generated knockin mice homozygous for an in-frame insertion mutation in Cfap54 corresponding to the human PCD-associated in-frame 18-nucleotide ...