Inferring CNV from Single-Cell RNA-Seq. Contribute to broadinstitute/infercnv development by creating an account on GitHub.

InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes.

2023年5月19日 · Inferring CNV from Single-Cell RNA-Seq. Contribute to broadinstitute/infercnv development by creating an account on GitHub.

Inferring CNV from Single-Cell RNA-Seq. Contribute to broadinstitute/infercnv development by creating an account on GitHub.

Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable. WARNING: This package is still experimental.

Inferring CNV from Single-Cell RNA-Seq. Contribute to broadinstitute/infercnv development by creating an account on GitHub.

Inferring CNV from Single-Cell RNA-Seq. Contribute to broadinstitute/infercnv development by creating an account on GitHub.

2019年3月20日 · Features of NG-CHM include a search box for locating any entry in the heat map, informative linkouts for genes, ability to save the heat map as a PDF, and customizable heat map properties. When running NextGenHeatMap with inferCNV, a heat map is returned as the file infercnv.ngchm. The heat map is viewable through the standalone NG-CHM Heat Map ...

2020年2月20日 · Below provides an example of how you might generate a counts matrix for use with inferCNV, starting with 10x data. Here, we'll use Seurat for converting 10x count data to a compatible matrix format.

Inferring CNV from Single-Cell RNA-Seq. Contribute to broadinstitute/infercnv development by creating an account on GitHub.