Option Parameter Description Default Behavior; Output; Primary Sequences; Control Sequences and Background Model-neg: file: MEME-ChIP will look for motifs enriched in the primary sequences relative to this control set of sequences in FASTA format.These sequences will be input as control sequences to MEME, STREME and CentriMo.

MEME options下可以设置寻找模体的个数等。 STREME options下可通过设置P值，挖掘序列中富集或相对富集的模体。 CentriMo options可以识别一些模体对特定位置的明显偏好，可以查看局部位置的富集程度。

2020年5月24日 · 如果你有一条序列或者多条序列，想知道有哪些转录因子可能结合在上面？前两天老板推荐我使用meme-chip网站预测（我们实验室经常使用的），当然还有很多网站可以预测转录因子的结...

What is the Meme Generator? It's a free online image maker that lets you add custom resizable text, images, and much more to templates. People often use the generator to customize established memes, such as those found in Imgflip's collection of Meme Templates.However, you can also upload your own templates or start from scratch with empty templates.

2019年12月18日 · 适用于分析数据量较大的序列上的motif信息。首先通过MEME和DREME两款软件预测de novo motif, 然后利用CentriMo识别在序列的中心区域显著富集的motif, 同时采用Tomtom软件将预测到的de novo motif与指定数据库的已知motif进行比对，确定二者的相似度。最后利用FIMO软件...

2011年6月15日 · Motivation: Advances in high-throughput sequencing have resulted in rapid growth in large, high-quality datasets including those arising from transcription factor (TF) ChIP-seq experiments. While there are many existing tools for discovering TF binding site motifs in such datasets, most web-based tools cannot directly process such large datasets.

MEME-ChIP runs each program in its analysis in a different folder in the output directory. The main file, meme-chip.html, is an interactive HTML file, and it contains links to the other output files produced by MEME-ChIP.A tab-separated values (TSV) file suitable for parsing by scripts and viewing by Excel is also created (summary.tsv), as well …

2019年4月14日 · 这一部分是使用deeptools对样品进行相关性分析以及主成分分析，同时从peak中去挖掘motif。我使用的工具是MEME-ChIP，MEME是一个工具系列，挖掘motif的工具比较丰富，MEME、DREME、TomTom、MEME-ChIP，其中MEME-ChIP可以同时调用其他几个工具进行综合分析，比较方便。deeptools是一个很好用的深度分析工具，中文版 ...

Click on the menu at the left to see which of the following motif input methods are available. Type in motifs When this option is available you may directly input multiple motifs by typing them (or using "cut-and-paste").

2022年11月15日 · Ở phần 1 của serie thì mình đã chia sẻ cho anh em khá nhiều ảnh meme chó hài hước rồi. Ở phần này sẽ tiếp tục là những bức ảnh hài hước và độc đáo khác nữa. Anh em có thể lướt xem qua một lượt, khi cần comment thì vào lấy cho nhanh ha 🙂