CAGEr: an R package for CAGE (Cap Analysis of Gene
2024年10月29日 · Reading in multiple CAGE datasets from various sources; user provided BAM or TSS input files, public CAGE datasets from accompanying data package. Correcting …
Bioconductor - CAGEr
After clustering, CAGEr performs analyses of promoter width and detects differential usage of TSSs (promoter shifting) between samples. CAGEr also exports its data as genome browser …
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CAGEr package - RDocumentation
Learn R Programming CAGEr (version 1.14.0) Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome …
Bioconductor - CAGEfightR
CAGE is a widely used high throughput assay for measuring transcription start site (TSS) activity. CAGEfightR is an R/Bioconductor package for performing a wide range of common data …
Cage (graph theory) - Wikipedia
In the mathematical field of graph theory, a cage is a regular graph that has as few vertices as possible for its girth. Formally, an (r, g)-graph is defined to be a graph in which each vertex …
A step-by-step guide to analyzing CAGE data using R/Bioconductor
Cap Analysis of Gene Expression (CAGE) is one of the most popular 5'-end sequencing methods. In a single experiment, CAGE can be used to locate and quantify the expression of both …
使用R/Bioconductor分析CAGE数据的分步指南 - bob入口
Cap Analysis of Gene Expression (CAGE)是目前最常用的5 '端测序方法之一。在单个实验中，CAGE可用于定位和量化转录起始位点(tss)和增强子的表达。该工作流是一个关于如何使 …
CAGE analysis using the R Bioconductor package CAGEr - Dave …
2013年4月16日 · Cap Analysis Gene Expression (CAGE) is a molecular technique, developed at RIKEN, which captures all transcription starting sites (TSSs) of an RNA population. The C in …
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