Are codons in RNA layered? Are we misinterpreting RNA codons?
2020年10月27日 · I am analyzing nucleotide base-pair patterns in RNA and DNA, and had a thought about RNA and DNA (Let me first state though, I am not a biologist; I am an …
phylogenetics - How to predict stop codons in Illumina reads ...
I am sequencing after inducing mutations, i.e. my reads contain various indels. This is why I need to do this for each read in my alignment. I am looking for nonsense mutations, but not only. …
Newest 'codon' Questions - Bioinformatics Stack Exchange
2024年8月23日 · Stack Exchange Network. Stack Exchange network consists of 183 Q&A communities including Stack Overflow, the largest, most trusted online community for …
rna seq - Identifying nested/overlapping reading frames in …
2020年9月28日 · An RNA sequence has six possible reading frames depending on the offset (0, 1, 2) and the direction (forward, reverse complement). All frames can potentially be used for …
rna - Is is possible to predict ncRNAs from sequence and …
2020年11月25日 · I know (from previously published research) that in gene B (a close paralogue of gene A), there is a non-coding, antisense RNA. This antisense RNA regulates gene B by …
What to use to edit RNA alignments? - Bioinformatics Stack …
2017年6月8日 · Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities. It uses Jmol to view 3D structures, and VARNA to display RNA …
rna splicing - spliceAI not giving output value while running using …
2023年8月7日 · Uploaded_variation Location Allele Gene Feature Feature_type Consequence cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation …
Trending 'rna' questions - Bioinformatics Stack Exchange
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What are the p01sum and p0prop parameters in godon?
2020年6月3日 · When using branch-site model in Godon, model optimization results include the following parameters: p01sum and p0prop.
Translating a genome sequence into possible frames
2020年3月15日 · I have a sequence below from MYC gene about which I need to translate the sequence in all possible frames AND identify (for each frame) which codons are actually used …