GAADE: identification spatially variable genes based on adaptive …
2024年12月20日 · Through adaptive learning, GAADE effectively identifies spatially specific gene expression in small functional regions within tissues and provides a comprehensive view of …
Gene Graphics: a genomic neighborhood data visualization web ...
在academic.oup.com上查看更多信息Conserved physical clustering of genes (conserved genome context) in phylogenetically distant genomes is a strong suggestion of functional association (Overbeek et al., 1999). Thus, displaying and collating gene clusters is a common step in comparative genomics. Most of the specialized databases such as SEED …- 作者: Katherine J Harrison, Valérie de Crécy-Lagard, Rémi Zallot
- 预计阅读时间：9 分钟
- Publish Year: 2018
- 发布日期: 2018年4月15日
Visualizing gene expression changes in time, space, and single …
2023年6月16日 · Leveraging the concept of choropleth maps, we used specific types of thematic maps for representing variations of variables, i.e., fluctuations in gene and transcripts …
Visualizing Cluster-specific Genes from Single-cell Transcriptomics ...
2022年6月15日 · APL is a freely available R package for identification of cluster-specific genes using Association Plots. The package was developed in a way that allows for applying it to …
Gene Graphics
Viewing and comparing gene neighborhoods is a common step in comparative genomics and gene analysis. We present, “Gene Graphics”, an application that allows for consistent, visually …
TargetGene: a comprehensive database of cell-type-specific target …
2023年10月23日 · These resources and methods greatly enhance our ability to elucidate the genetic basis of common traits and diseases by identifying cell type-specific gene targets for …
scGNN is a novel graph neural network framework for single
2021年3月25日 · Here, the authors introduce a graph neural network based on a hypothesis-free deep learning framework as an effective representation of gene expression and cell–cell …
Glimma: interactive graphics for gene expression analysis
The open-source Glimma package creates interactive graphics for exploring gene expression analysis with a few simple R commands. It extends popular plots found in the limma package, …
Inferring cancer common and specific gene networks via multi …
2023年1月18日 · In this study, we propose a new sparse regularized multi-layer decomposition graphical model to jointly estimate the gene networks of multiple cancer types. Our model can …
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