The TYGS pipeline covers many aspects of relevance to modern microbial taxonomy, including extraction of the 16S rDNA gene sequence, determination of the closest type strains, and state …

TYGS results include species and subspecies boundaries, genome-scale, proteome-scale (optional) and 16S rRNA gene phylogenetic trees with branch support, links to the taxonomic …

2019年5月16日 · TYGS is an integrated approach for the classification of microbes that unlocks novel scientific approaches to microbiologists worldwide and is particularly helpful for the …

TYGS, the Type (Strain) Genome Server, is a user-friendly high-throughput web server for genome-based prokaryote taxonomy. Microbial taxonomy needs genome-based analyses but …

3) [Phylogenetic trees]: A phylogenetic tree is the appropriate way to use (dis-)similarity matrices for taxonomic purposes, particularly in conjunction with branch support. The TYGS thus …

Distance Calculator7, TYGS compares user genomes against its database of type (strain) genomes, followed by inference of phylogenetic trees (instead of mere clusterings) with branch

In this study, accurate taxonomic assignment of strain AAK_AS5 isolated from activated sludge was achieved by in-silico genomic comparison using Overall Genome-based Relatedness …

Phylogenomic tree based on TYGS implementation showing the 10 closest type strains for each of four strains of Bradyrhizobium barranii sp. nov. The tree was inferred with FastME 2.1.6.1 …

TYGS consists of three main components: a comprehensive type-related database including genomic, taxonomic and nomenclatural information; a versatile workflow engine that, e.g., …

In the phylogenetic tree constructed in TYGS with complete genome data (Figure 2), strain BBB001 T is closely related with P. brassicae MAFF212427 T and P. qingdaonensis JJ3 T . In …